Namespace epiclass.utils.shap

Sub-modules

epiclass.utils.shap.analyze_shaps_kfold

For every folder of a cross-validation, take already computed SHAP values and analyze them …

epiclass.utils.shap.benchmark_shap

Benchmarking SHAP value computation functions.

epiclass.utils.shap.prep_shap_run

Functions to prepare background and evaluation data for SHAP analysis.

epiclass.utils.shap.sample_ontology_shap_ranks

Create graphs of shap values ranks for certain cell types VS other cell types …

epiclass.utils.shap.shap_analysis

Module for more complex SHAP analysis functions …

epiclass.utils.shap.shap_to_rank

Script to convert SHAP values files to rank values.

epiclass.utils.shap.shap_utils

Module containing utility functions for shap files handling and a bit of analysis.

epiclass.utils.shap.subset_features_handling

Module that defines functions useful for handling data subsets and their 'important' features. Used on k-fold SHAP analysis results.